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                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549

                                  SCHEDULE 13G

                    UNDER THE SECURITIES EXCHANGE ACT OF 1934

                               (AMENDMENT NO. 2)*


                          AEOLUS PHARMACEUTICALS, INC.
--------------------------------------------------------------------------------
                                (Name of Issuer)


                                  COMMON STOCK
--------------------------------------------------------------------------------
                         (Title of Class of Securities)


                                  45325 S-10-1
--------------------------------------------------------------------------------
                                 (CUSIP Number)


                                DECEMBER 31, 2006
--------------------------------------------------------------------------------
             (Date of Event which Requires Filing of this Statement)

Check the appropriate box to designate the rule pursuant to which this Schedule
is filed:

[_] Rule 13d-1(b)

[_] Rule 13d-1(c)

[X] Rule 13d-1(d)


*The remainder of this cover page shall be filled out for a reporting person's
initial filing on this form with respect to the subject class of securities, and
for any subsequent amendment containing information which would alter the
disclosures provided in a prior cover page.

The information required in the remainder of this cover page shall not be deemed
to be "filed" for the purpose of Section 18 of the Securities Exchange Act of
1934 ("Act") or otherwise subject to the liabilities of that section of the Act
but shall be subject to all other provisions of the Act (however, see the
Notes).

PERSONS WHO RESPOND TO THE COLLECTION OF INFORMATION CONTAINED IN THIS FORM ARE
NOT REQUIRED TO RESPOND UNLESS THE FORM DISPLAYS A CURRENTLY VALID OMB CONTROL
NUMBER.




                                       1





-----------------------               13G                -----------------------
CUSIP No.                                                 Page 2 of 12 Pages
-----------------------                                  -----------------------



 1.   NAMES OF REPORTING PERSONS

      Great Point Partners, LLC

      I.R.S. IDENTIFICATION NO. OF ABOVE PERSON (ENTITIES ONLY):
      37-1475292

 2.   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP

      (a)  [_]

      (b)  [_]

 3.   SEC USE ONLY




 4.   CITIZENSHIP OR PLACE OF ORGANIZATION

      USA

  NUMBER OF SHARES        5.    SOLE VOTING POWER

   BENEFICIALLY           6.    SHARED VOTING POWER

  OWNED BY EACH                                      1,704,747

 REPORTING PERSON          7.    SOLE DISPOSITIVE POWER

     WITH
                           8.    SHARED DISPOSITIVE POWER

                                                     1,704,747

 9.  AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

              1,704,747

10. CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES
I   (See Instructions)
                                                                             [_]
11.  PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)

              5.82%

12. TYPE OF REPORTING PERSON (See Instructions)

              OO






-----------------------               13G                -----------------------
CUSIP No.                                                 Page 3 of 12 Pages
-----------------------                                  -----------------------



 1.   NAMES OF REPORTING PERSONS

       Biomedical Value Fund, L.P.

      I.R.S. IDENTIFICATION NO. OF ABOVE PERSON (ENTITIES ONLY):
      37-1475295

 2.   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP

      (a)  [_]

      (b)  [_]

 3.   SEC USE ONLY




 4.   CITIZENSHIP OR PLACE OF ORGANIZATION

      Delaware, USA

  NUMBER OF SHARES        5.    SOLE VOTING POWER

   BENEFICIALLY           6.    SHARED VOTING POWER

  OWNED BY EACH                                       952,000

 REPORTING PERSON          7.    SOLE DISPOSITIVE POWER

     WITH
                           8.    SHARED DISPOSITIVE POWER

                                                      952,000

 9.  AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

               952,000

10. CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES
I   (See Instructions)
                                                                             [_]
11.  PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)

               3.25%

12. TYPE OF REPORTING PERSON (See Instructions)

              PN






-----------------------               13G                -----------------------
CUSIP No.                                                 Page 4 of 12 Pages
-----------------------                                  -----------------------



 1.   NAMES OF REPORTING PERSONS

      Great Point GP, LLC

      I.R.S. IDENTIFICATION NO. OF ABOVE PERSON (ENTITIES ONLY):
       37-1475293

 2.   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP

      (a)  [_]

      (b)  [_]

 3.   SEC USE ONLY




 4.   CITIZENSHIP OR PLACE OF ORGANIZATION

      Delaware, USA

  NUMBER OF SHARES        5.    SOLE VOTING POWER

   BENEFICIALLY           6.    SHARED VOTING POWER

  OWNED BY EACH                                       952,000

 REPORTING PERSON          7.    SOLE DISPOSITIVE POWER

     WITH
                           8.    SHARED DISPOSITIVE POWER

                                                      952,000

 9.  AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

               952,000

10. CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES
I   (See Instructions)
                                                                             [_]
11.  PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)

               3.25%

12. TYPE OF REPORTING PERSON (See Instructions)

              OO






-----------------------               13G                -----------------------
CUSIP No.                                                 Page 5 of 12 Pages
-----------------------                                  -----------------------



 1.   NAMES OF REPORTING PERSONS

      Biomedical Offshore Value Fund, Ltd.

      I.R.S. IDENTIFICATION NO. OF ABOVE PERSON (ENTITIES ONLY):
      N/A

 2.   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP

      (a)  [_]

      (b)  [_]

 3.   SEC USE ONLY




 4.   CITIZENSHIP OR PLACE OF ORGANIZATION

      Cayman Islands

  NUMBER OF SHARES        5.    SOLE VOTING POWER

   BENEFICIALLY           6.    SHARED VOTING POWER

  OWNED BY EACH                                        752,747

 REPORTING PERSON          7.    SOLE DISPOSITIVE POWER

     WITH
                           8.    SHARED DISPOSITIVE POWER

                                                       752,747

 9.  AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

               752,747

10. CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES
I   (See Instructions)
                                                                             [_]
11.  PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)

              2.57%

12. TYPE OF REPORTING PERSON (See Instructions)

               CO





-----------------------               13G                -----------------------
CUSIP No.                                                 Page 6 of 12 Pages
-----------------------                                  -----------------------



 1.   NAMES OF REPORTING PERSONS

      Dr. Jeffrey R. Jay, M.D.

      I.R.S. IDENTIFICATION NO. OF ABOVE PERSON (ENTITIES ONLY):


 2.   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP

      (a)  [_]

      (b)  [_]

 3.   SEC USE ONLY




 4.   CITIZENSHIP OR PLACE OF ORGANIZATION

      Delaware, USA

  NUMBER OF SHARES        5.    SOLE VOTING POWER

   BENEFICIALLY           6.    SHARED VOTING POWER

  OWNED BY EACH                                        1,704,747

 REPORTING PERSON          7.    SOLE DISPOSITIVE POWER

     WITH
                           8.    SHARED DISPOSITIVE POWER

                                                       1,704,747

 9.  AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

               1,704,747

10. CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES
I   (See Instructions)
                                                                             [_]
11.  PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)

              5.82%

12. TYPE OF REPORTING PERSON (See Instructions)

               IN








-----------------------               13G                -----------------------
CUSIP No.                                                 Page 7 of 12 Pages
-----------------------                                  -----------------------




     ITEM 1.        NAMES OF REPORTING PERSONS

                    (a)      Aeolus Pharmaceuticals, Inc.

                    (b)      23811 Inverness Place Laguna Niguel, California
                             92677 U.S.A.

     ITEM 2.

                    (a)               Name of Person
                                      Filing Great Point Partners, LLC
                                      Biomedical Value Fund, L.P.
                                      Great Point GP, LLC
                                      Biomedical Offshore
                                      Value Fund, Ltd.
                                      Dr. Jeffrey R. Jay, M.D.

                                (b)   Address of Principal Business Office, or
                                      if none, Residence

                                              165 Mason Street, 3rd Floor
                                              Greenwich, CT 06830

                    (c)      Citizenship

                    Great Point Partners, LLC is a limited liability company
                    organized under the laws of the State of Delaware.
                    Biomedical Value Fund, L.P. is a limited partnership
                    organized under the laws of the State of Delaware. Great
                    Point GP, LLC is a limited liability company organized under
                    the laws of the State of Delaware. Biomedical Offshore Value
                    Fund, Ltd. is a limited liability corporation organized
                    under the laws of the Cayman Islands. Dr. Jeffrey R. Jay,
                    M.D. is a citizen of the United States.

                    (d)      Title of Class of Securities

                             Common Stock

                    (e)      CUSIP Number

                             45325 S-10-1

     ITEM 3.        IF THIS STATEMENT IS FILED PURSUANT TO SS.240.13D-1(B) OR
                    240.13D.2(B) OR (C), CHECK WHETHER THE PERSON FILING IS A:

                             Not Applicable.

                    (a)   [_]  Broker or dealer registered under Section 15 of
                               the Act (15 U.S.C. 78o)

                    (b)   [_]  Bank as defined in Section 3(a)(6) of the Act
                               (15 U.S.C. 78c).

                    (c)   [_]  Insurance company as defined in Section 3(a)(19)
                               of the Act (15. U.S.C. 78c).

                    (d)   [_]  Investment Company registered under Section 8 of
                               the Investment Company Act of 1940 (15 U.S.C.
                               80a-8).

                    (e)   [_]  An investment adviser in accordance with
                               ss.240.13d-1(b)(1)(ii)(E).

                    (f)   [_]  An employee benefit plan or endowment fund in
                               accordance with ss.240.13d-1(b)(1)(ii)(F).






-----------------------               13G                -----------------------
CUSIP No.                                                 Page 8 of 12 Pages
-----------------------                                  -----------------------



                    (g)   [_]  A parent holding company or control person in
                               accordance with ss.240.13d-1(b)(1)(ii)(G).

                    (h)   [_]  A savings associations as defined in Section
                               3(b) of the Federal Deposit Insurance Act (12
                               U.S.C. 1813).

                    (i)   [_]  A church plan that is excluded from the
                               definition of an investment company under Section
                               3(c)(14) of the Investment Company Act of 1940
                               (15 U.S.C. 80a-3).

                    (j)   [_]  Group, in accordance with
                               ss.240.13d-1(b)(1)(ii)(J).






-----------------------               13G                -----------------------
CUSIP No.                                                 Page 9 of 12 Pages
-----------------------                                  -----------------------


     ITEM 4.        OWNERSHIP

                    Biomedical Value Fund, L.P. ("BVF") is the direct beneficial
                    owner of 952,000 shares (the "BVF Shares"), consisting of
                    680,000 shares of Common Stock and warrants to purchase
                    272,000 shares of Common Stock. Great Point GP, LLC, is the
                    general partner of BVF, and by virtue of such status may be
                    deemed to be the beneficial owner of the BVF Shares. Great
                    Point Partners, LLC is the investment manager of BVF, and by
                    virtue of such status may be deemed to be the beneficial
                    owner of the BVF Shares. Dr. Jeffrey R. Jay, M.D. has voting
                    and investment power with respect to the BVF Shares, and
                    therefore may be deemed to be the beneficial owner of the
                    BVF Shares.

                    Biomedical Offshore Value Fund, Ltd. ("BOVF") is the direct
                    beneficial owner of 752,747shares (the "BOVF Shares"),
                    consisting of 524,747 shares of Common Stock, warrants to
                    purchase 228,000 shares of Common Stock. Great Point
                    Partners, LLC is the investment manager of BOVF, and by
                    virtue of such status may be deemed to be the beneficial
                    owner of the BOVF Shares. Dr. Jeffrey R. Jay, M.D. has
                    voting and investment power with respect to the BOVF Shares,
                    and therefore may be deemed to be the beneficial owner of
                    the BOVF Shares.

                    Notwithstanding the above, Great Point Partners, LLC and Dr.
                    Jay disclaim beneficial ownership of the BVF Shares and the
                    BOVF Shares and Great Point GP, LLC disclaims beneficial
                    ownership of the BVF Shares, except to the extent of their
                    respective pecuniary interests.

                    The Information in Items 1 and 5 through 11 on the cover
                    pages of this Amendment No. 1 to Schedule 13G is hereby
                    incorporated by reference.

                    Provide the following information regarding the aggregate
                    number and percentage of the class of securities of the
                    issuer identified in Item 1.

                    (a) Amount beneficially owned: _______________________.

                    (b) Percent of class: _______________________.

                    (c) Number of shares as to which the person has:

                             (i)   Sole power to vote or to direct the
                                   vote _______________________.

                             (ii)  Shared power to vote or to direct the
                                   vote _______________________.

                             (iii) Sole power to dispose or to direct the
                                   disposition of _______________________.

                             (iv)  Shared power to dispose or to direct the
                                   disposition of _______________________.

ITEM 5.           OWNERSHIP OF FIVE PERCENT OR LESS OF A CLASS

                  Not Applicable.

ITEM 6.           OWNERSHIP OF MORE THAN FIVE PERCENT ON BEHALF OF ANOTHER
                  PERSON:

                  See item 4.

ITEM 7.           IDENTIFICATION AND CLASSIFICATION OF THE SUBSIDIARY WHICH
                  ACQUIRED THE SECURITY BEING REPORTED ON BY THE PARENT HOLDING
                  COMPANY

                  Not Applicable.





-----------------------               13G                -----------------------
CUSIP No.                                                 Page 10 of 12 Pages
-----------------------                                  -----------------------


ITEM 8.           IDENTIFICATION AND CLASSIFICATION OF MEMBERS OF THE GROUP

                  Not Applicable.

ITEM 9.           NOTICE OF DISSOLUTION OF GROUP

                  Not Applicable.

ITEM 10.          CERTIFICATION

By signing below I certify that, to the best of my knowledge and belief, the
securities referred to above were not acquired and are not held for the purpose
of or with the effect of changing or influencing the control of the issuer of
the securities and were not acquired and are not held in connection with or as
participant in any transaction having that purpose or effect.












-----------------------               13G                -----------------------
CUSIP No.                                                 Page 11 of 12 Pages
-----------------------                                  -----------------------


                                    SIGNATURE

         After reasonable inquiry and to the best of my knowledge and belief, I
certify that the information set forth in this statement is true, complete and
correct.

Date:  February 14, 2007

                          BIOMEDICAL VALUE FUND, L.P.


                          Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                            ------------------------------------
                                            By Great Point GP, LLC,
                                              as general partner,
                                            By Dr. Jeffrey R. Jay, M.D.,
                                              as senior managing member

                          GREAT POINT GP, LLC


                          Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                            ------------------------------------
                                            By Dr. Jeffrey R. Jay, M.D.
                                              as senior managing member

                          BIOMEDICAL OFFSHORE VALUE FUND, LTD.


                          Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                            ------------------------------------
                                            By Great Point Partners, LLC,
                                              as investment manager,
                                            By Dr. Jeffrey R. Jay, M.D.,
                                              as senior managing member

                          GREAT POINT PARTNERS, LLC


                          Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                            ------------------------------------
                                            By Dr. Jeffrey R. Jay, M.D.,
                                              as senior managing member

                          DR. JEFFREY R. JAY, M.D.

                          Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                            ------------------------------------






                                                                       EXHIBIT A

              AGREEMENT REGARDING THE JOINT FILING OF SCHEDULE 13G

The undersigned hereby agree as follows:

         (i) Each of them is individually eligible to use the Schedule 13G to
which this Exhibit is attached, and such Schedule 13G is filed on behalf of each
of them; and

         (ii) Each of them is responsible for the timely filing of such Schedule
13G and any amendments thereto, and for the completeness and accuracy of the
information concerning such person contained therein; but none of them is
responsible for the completeness or accuracy of the information concerning the
other persons making the filing, unless such person knows or has reason to
believe that such information is inaccurate.

Date:  February 14, 2007

                               BIOMEDICAL VALUE FUND, L.P.


                               Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                                 -------------------------------
                                                 By Great Point GP, LLC,
                                                   as general partner,
                                                 By Dr. Jeffrey R. Jay, M.D.,
                                                   as senior managing member

                               GREAT POINT GP, LLC


                               Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                                 -------------------------------
                                                 By Dr. Jeffrey R. Jay, M.D.
                                                   as senior managing member

                               BIOMEDICAL OFFSHORE VALUE FUND, LTD.


                               Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                                 -------------------------------
                                                 By Great Point Partners, LLC,
                                                   as investment manager,
                                                 By Dr. Jeffrey R. Jay, M.D.,
                                                   as senior managing member

                               GREAT POINT PARTNERS, LLC


                               Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                                 -------------------------------
                                                 By Dr. Jeffrey R. Jay, M.D.,
                                                   as senior managing member

                               DR. JEFFREY R. JAY, M.D.

                               Signature:        /s/ DR. JEFFREY R. JAY, M.D.
                                                 -------------------------------